PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083311.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 195aa    MW: 22062.7 Da    PI: 6.7654
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.81.7e-33894186
          DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
                    +C +Ck+lrrkC+k+Cv+apyf  e+ +++fa++h++FGasnv kll++lp ++r +a+ ++ y+A+ar++dP+yG+++ i++lqqq
  XP_011083311.1  8 PCGVCKFLRRKCVKGCVFAPYFSYEEaAAHFAAIHRVFGASNVAKLLAHLPMSDRCQAAVTVSYQAQARLQDPIYGCISRIFALQQQ 94
                    7*********************998868*********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.9677114IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-32894IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRGCGNSPCG VCKFLRRKCV KGCVFAPYFS YEEAAAHFAA IHRVFGASNV AKLLAHLPMS  60
DRCQAAVTVS YQAQARLQDP IYGCISRIFA LQQQDTVRNW CQNHVEMSQW DTCLNNNNIG  120
SMPIHSDSRI ITPNPNSVKC GNTEENTLFG STDSPHEMQL NYTHWPFDQE EDGDHDHDLQ  180
SLPFRYIQYS QGKIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083311.11e-149PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9M2J75e-51LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A0D2PWG04e-55A0A0D2PWG0_G
STRINGPGSC0003DMT4000251427e-53(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-52lateral organ boundaries-domain 29